Handy Cheat Sheets
Markdown Cheat Sheet - link
Best Practice Papers
Best practices for scientific computing - link
A Quick Guide to Organizing Computational Biology Projects - link
Programming
Contributed
Git Workflows (Jake) - Link
A series of web pages comparing different workflows in git
Six Factors Affecting Reproducability in Life Science Research and How to Handle Them (Rolf) - Link
An article in Nature discussing some of the main issues that disrupt reproducibility in the bio sciences. It is a good read that offers some solutions/best practices to these main problems
Resolving git merge conflicts (Isis) -
Resolve merge conflicts course
Merge conflicts tutorial
Two pages that explains the different type of merging conflicts that can occur and how to fix them.
Andy’s Brain Book (Denicia) - Link
A guide to fMRI all the way from the most popular software, preprocessing, and ROI or Whole Brain analysis, including a walkthrough with sample data. This book also has a youtube companion that helps alongside the book.